The “Human Diseases Models Morphological Phenotyping” (MorphoPHEN) master’s program combines the excellence and expertise of four leading European institutions: the Autonomous University of Barcelona (UAB), the University of Naples Federico II (UNINA), the Aristotle University of Thessaloniki (AUTH), and the University of Lisbon (ULISBOA). They bring knowledge on the four main branches necessary to analyze the morphology of mouse disease models: Anatomy and Embryology, Pathology, Imaging and Deep learning.